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James Fellows YatesJoin us on December 10th for an online ‘Meta-*omics <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#Nextflow</a> <a href="https://genomic.social/tags/pipeline" class="mention hashtag" rel="nofollow noopener" target="_blank">#pipeline</a> community exhibition day’, for an intro and hands-on tutorial of <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://genomic.social/tags/metataxonomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metataxonomics</a> <a href="https://genomic.social/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a> <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> pipelines directly from the developers!Since the first advert: we also have an additional pipeline that will be exhibited (metagenomics-toolkit)We are almost oversubscribed, so register ASAP, deadline to register is Oct 24th: <a href="https://tally.so/r/31qJyQ" rel="nofollow noopener" translate="no" target="_blank">https://tally.so/r/31qJyQ</a>

James Fellows YatesDo you perform analysis on <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://genomic.social/tags/metataxonomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metataxonomics</a> <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://genomic.social/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a> datasets?Would you like to find out how to make your <a href="https://genomic.social/tags/bioinformatic" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatic</a> analysis more efficient, scalable, and reproducible?Join us on December 10th for an online ‘Meta-*omics <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#Nextflow</a> <a href="https://genomic.social/tags/pipeline" class="mention hashtag" rel="nofollow noopener" target="_blank">#pipeline</a> community exhibition day’, for an intro and hands-on tutorial directly from the developers!Interested? Please register your interest with this link: <a href="https://tally.so/r/31qJyQ" rel="nofollow noopener" translate="no" target="_blank">https://tally.so/r/31qJyQ</a> !

James Fellows Yates📣 Last call 📣 👨🏾‍💻 Do you develop a <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#Nextflow</a> <a href="https://genomic.social/tags/pipeline" class="mention hashtag" rel="nofollow noopener" target="_blank">#pipeline</a> for <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://genomic.social/tags/metataxonomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metataxonomics</a>, <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a>, <a href="https://genomic.social/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a>🎉 Represent your pipeline at an upcoming community 'meta-omics' exhibition day by giving a tutorial! ✏️ Register your interest to demo your pipeline: <a href="https://tally.so/r/3Xp7vY" rel="nofollow noopener" translate="no" target="_blank">https://tally.so/r/3Xp7vY</a>

James Fellows Yates❓ Do you develop a <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#Nextflow</a> pipeline for <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://genomic.social/tags/metataxonomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metataxonomics</a>, <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a>, <a href="https://genomic.social/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a>, etc?🧑‍💻 I'm looking for <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> developers to give demos of their <a href="https://genomic.social/tags/opensource" class="mention hashtag" rel="nofollow noopener" target="_blank">#opensource</a> pipelines to the scientific community in a ‘Meta-*omics Nextflow pipeline community exhibition day’!🧑‍🏫 This involves a short presentation and a hands-on tutorial for attendees (we will provide compute resources!)👋 If this sounds interesting to you, please let me know: <a href="https://tally.so/r/3Xp7vY" rel="nofollow noopener" translate="no" target="_blank">https://tally.so/r/3Xp7vY</a>

James Fellows YatesDo you develop a <a href="https://genomic.social/tags/Nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#Nextflow</a> pipeline for <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://genomic.social/tags/metataxonomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metataxonomics</a>, <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a>, <a href="https://genomic.social/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a>, etc?I'm looking for <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> developers interested in giving demos of their <a href="https://genomic.social/tags/opensource" class="mention hashtag" rel="nofollow noopener" target="_blank">#opensource</a> pipelines to the scientific community in a ‘Meta-*omics Nextflow pipeline community exhibition day’!This would involve a short presentation and a hands-on tutorial for attendees (we will provide compute resources!)If this sounds interesting, please let me know: <a href="https://tally.so/r/3Xp7vY" rel="nofollow noopener" translate="no" target="_blank">https://tally.so/r/3Xp7vY</a>

nf-corePipeline release! nf-core/metatdenovo v1.3.0 - Release v. 1.3.0!Please see the changelog: <a href="https://github.com/nf-core/metatdenovo/releases/tag/1.3.0" rel="nofollow noopener" translate="no" target="_blank">https://github.com/nf-core/metatdenovo/releases/tag/1.3.0</a><a href="https://mstdn.science/tags/eukaryotes" class="mention hashtag" rel="nofollow noopener" target="_blank">#eukaryotes</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://mstdn.science/tags/prokaryotes" class="mention hashtag" rel="nofollow noopener" target="_blank">#prokaryotes</a> <a href="https://mstdn.science/tags/viruses" class="mention hashtag" rel="nofollow noopener" target="_blank">#viruses</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

Amelia Cervera 🧬Viroid-like “obelisk” agents are widespread in the ocean and exceed the abundance of RNA viruses in the prokaryotic fraction. <a href="https://genomic.social/tags/Viroids" class="mention hashtag" rel="nofollow noopener" target="_blank">#Viroids</a> <a href="https://genomic.social/tags/Obelisks" class="mention hashtag" rel="nofollow noopener" target="_blank">#Obelisks</a> <a href="https://genomic.social/tags/HammerheadRibozyme" class="mention hashtag" rel="nofollow noopener" target="_blank">#HammerheadRibozyme</a> <a href="https://genomic.social/tags/Metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metatranscriptomics</a> <a href="https://genomic.social/tags/UncorrectedManuscript" class="mention hashtag" rel="nofollow noopener" target="_blank">#UncorrectedManuscript</a> <a href="https://academic.oup.com/ismej/advance-article/doi/10.1093/ismejo/wraf033/8042533" rel="nofollow noopener" translate="no" target="_blank">https://academic.oup.com/ismej/advance-article/doi/10.1093/ismejo/wraf033/8042533</a>

nf-core🦠 Interested in <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#nextflow</a> & anything 'meta-' ?(<a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#metabarcoding</a>, <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a>, <a href="https://mstdn.science/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaproteomics</a>, <a href="https://mstdn.science/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbes</a> <a href="https://mstdn.science/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#MicrobialEcology</a> & more!)📆 Join us next Tuesday 13:00 CEST (3rd September) for an nf-core <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#bytesize</a> for the <a href="https://mstdn.science/tags/metaomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metaomics</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#nfcore</a> special interest group! (Also on YouTube after!)🤝 We will introduce how we want the community to work together with <a href="https://mstdn.science/tags/users" class="mention hashtag" rel="nofollow noopener" target="_blank">#users</a> and <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> developers to make the best pipelines for anything 'meta-'ℹ️ Zoom: <a href="https://nf-co.re/events/2024/bytesize_sig_meta_omics" rel="nofollow noopener" translate="no" target="_blank">https://nf-co.re/events/2024/bytesize_sig_meta_omics</a>

CellBioNewsScientists map <a href="https://scientificnetwork.de/tags/soil" class="mention hashtag" rel="nofollow noopener" target="_blank">#soil</a> <a href="https://scientificnetwork.de/tags/RNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#RNA</a> to <a href="https://scientificnetwork.de/tags/fungal" class="mention hashtag" rel="nofollow noopener" target="_blank">#fungal</a> <a href="https://scientificnetwork.de/tags/genomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#genomes</a> to understand <a href="https://scientificnetwork.de/tags/forest" class="mention hashtag" rel="nofollow noopener" target="_blank">#forest</a> ecosystems.<a href="https://scientificnetwork.de/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiome</a> <a href="https://scientificnetwork.de/tags/Metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metatranscriptomics</a><a href="https://phys.org/news/2024-04-scientists-soil-rna-fungal-genomes.html" rel="nofollow noopener" translate="no" target="_blank">https://phys.org/news/2024-04-scientists-soil-rna-fungal-genomes.html</a>

Axel ViselTime-resolved analysis of microbial mats - using metatranscriptomics!Amanda Shelton from Carnegie at <a href="https://genomic.social/tags/JGI2023" class="mention hashtag" rel="nofollow noopener" target="_blank">#JGI2023</a><a href="https://genomic.social/tags/jgi" class="mention hashtag" rel="nofollow noopener" target="_blank">#jgi</a> <a href="https://sciencemastodon.com/@LBNLBioSci" class="u-url mention" rel="nofollow noopener" target="_blank">@LBNLBioSci</a> <a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiology</a> <a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://genomic.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a>

Teresita Porter 🙋🏻‍♀️"**MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities"**<a href="https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01562-6" rel="nofollow noopener" target="_blank">https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01562-6</a><a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#RNAseq</a> <a href="https://ecoevo.social/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://ecoevo.social/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbes</a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://ecoevo.social/tags/pipeline" class="mention hashtag" rel="nofollow noopener" target="_blank">#pipeline</a>

IMPACTT MicrobiomeToday is the LAST DAY to apply for our joint CBW-IMPACTT Microbiome Analysis Workshop at the early-bird rate! July 5-7, 2023 at the University of Calgary. Apply here: <a href="https://bioinformatics.ca/workshops-all/2023-cbw-impactt-microbiome-analysis/" rel="nofollow noopener" target="_blank">https://bioinformatics.ca/workshops-all/2023-cbw-impactt-microbiome-analysis/</a><a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://mstdn.science/tags/workshop" class="mention hashtag" rel="nofollow noopener" target="_blank">#workshop</a> <a href="https://mstdn.science/tags/16S" class="mention hashtag" rel="nofollow noopener" target="_blank">#16S</a> <a href="https://mstdn.science/tags/18S" class="mention hashtag" rel="nofollow noopener" target="_blank">#18S</a> <a href="https://mstdn.science/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#sequencing</a> <a href="https://mstdn.science/tags/shotgunsequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#shotgunsequencing</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#genomics</a> <a href="https://mstdn.science/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#transcriptomics</a> <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://mstdn.science/tags/longread" class="mention hashtag" rel="nofollow noopener" target="_blank">#longread</a> <a href="https://mstdn.science/tags/markergene" class="mention hashtag" rel="nofollow noopener" target="_blank">#markergene</a> <a href="https://mstdn.science/tags/functionalannotation" class="mention hashtag" rel="nofollow noopener" target="_blank">#functionalannotation</a> <a href="https://mstdn.science/tags/tutorial" class="mention hashtag" rel="nofollow noopener" target="_blank">#tutorial</a> <a href="https://mstdn.science/tags/statistics" class="mention hashtag" rel="nofollow noopener" target="_blank">#statistics</a> <a href="https://mstdn.science/tags/biostatistics" class="mention hashtag" rel="nofollow noopener" target="_blank">#biostatistics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/microbiota" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiota</a> <a href="https://mstdn.science/tags/microbialecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbialecology</a> <a href="https://mstdn.science/tags/diversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#diversity</a> <a href="https://mstdn.science/tags/betadiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#betadiversity</a> <a href="https://mstdn.science/tags/differentialabundance" class="mention hashtag" rel="nofollow noopener" target="_blank">#differentialabundance</a>

Huttenhower LaboratoryDo you want to learn <a href="https://mstdn.science/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metagenomics</a> <a href="https://mstdn.science/tags/Metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Metatranscriptomics</a> <a href="https://mstdn.science/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> and <a href="https://mstdn.science/tags/MultiOmics" class="mention hashtag" rel="nofollow noopener" target="_blank">#MultiOmics</a>? Join us in June for this amazing course with Physalia Courses!<a href="https://physalia-courses.org/courses-workshops/course33/" rel="nofollow noopener" target="_blank">https://physalia-courses.org/courses-workshops/course33/</a>There are still a few seats available!

Helmut BürgmannHere is my <a href="https://mstdn.science/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#introduction</a> - I am a <a href="https://mstdn.science/tags/microbial" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbial</a> <a href="https://mstdn.science/tags/ecologist" class="mention hashtag" rel="nofollow noopener" target="_blank">#ecologist</a> with Eawag: <a href="https://mstdn.science/tags/Swiss" class="mention hashtag" rel="nofollow noopener" target="_blank">#Swiss</a> Federal Institute of <a href="https://mstdn.science/tags/Aquatic" class="mention hashtag" rel="nofollow noopener" target="_blank">#Aquatic</a> <a href="https://mstdn.science/tags/Science" class="mention hashtag" rel="nofollow noopener" target="_blank">#Science</a> and Technology in the Surface Waters department. Interested in the role of <a href="https://mstdn.science/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbes</a> in <a href="https://mstdn.science/tags/biogeochemistry" class="mention hashtag" rel="nofollow noopener" target="_blank">#biogeochemistry</a> of <a href="https://mstdn.science/tags/lake" class="mention hashtag" rel="nofollow noopener" target="_blank">#lake</a>, <a href="https://mstdn.science/tags/river" class="mention hashtag" rel="nofollow noopener" target="_blank">#river</a>, <a href="https://mstdn.science/tags/sediment" class="mention hashtag" rel="nofollow noopener" target="_blank">#sediment</a> & <a href="https://mstdn.science/tags/wastewater" class="mention hashtag" rel="nofollow noopener" target="_blank">#wastewater</a>. Also <a href="https://mstdn.science/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#research</a> on <a href="https://mstdn.science/tags/AntibioticResistance" class="mention hashtag" rel="nofollow noopener" target="_blank">#AntibioticResistance</a> in the <a href="https://mstdn.science/tags/environment" class="mention hashtag" rel="nofollow noopener" target="_blank">#environment</a>. We use <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a>, <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://mstdn.science/tags/qPCR" class="mention hashtag" rel="nofollow noopener" target="_blank">#qPCR</a> and good old-fashioned <a href="https://mstdn.science/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#microbiology</a>. <a href="https://mstdn.science/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#MicrobialEcology</a> <a href="https://mstdn.science/tags/EnvironmentalMicrobiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#EnvironmentalMicrobiology</a> <a href="https://mstdn.science/tags/AMR" class="mention hashtag" rel="nofollow noopener" target="_blank">#AMR</a> <a href="https://mstdn.science/tags/Antibiotic" class="mention hashtag" rel="nofollow noopener" target="_blank">#Antibiotic</a> <a href="https://mstdn.science/tags/methane" class="mention hashtag" rel="nofollow noopener" target="_blank">#methane</a> <a href="https://mstdn.science/tags/nitrogen" class="mention hashtag" rel="nofollow noopener" target="_blank">#nitrogen</a>

CBIbbersonA few more hashtags for good measure: <a href="https://mstdn.science/tags/WomenInScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#WomenInScience</a> <a href="https://mstdn.science/tags/WomenInSTEM" class="mention hashtag" rel="nofollow noopener" target="_blank">#WomenInSTEM</a> <a href="https://mstdn.science/tags/momademia" class="mention hashtag" rel="nofollow noopener" target="_blank">#momademia</a> <a href="https://mstdn.science/tags/bacteria" class="mention hashtag" rel="nofollow noopener" target="_blank">#bacteria</a> <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metatranscriptomics</a> <a href="https://mstdn.science/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#MicrobialEcology</a>

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