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James Hawley, PhDThe more I learn about <a href="https://scholar.social/tags/statistics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#statistics</a>, the more I understand that:1. I don't fully understand what experimental design means in theory or practice aside from a culture of tradition and learning by example 2. common <a href="https://scholar.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a> techniques like generalized linear models have such a technical depth we rarely understand, which leads to us misunderstand/misinterpret our results 3. there are many ways to do the same thing, but each have nuanced trade-offs that are difficult to express without simulations

eLifeCausalXtract, a flexible pipeline to extract causal effects from live-cell time-lapse imaging data. <a href="https://fediscience.org/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> <a href="https://elifesciences.org/articles/95485?utm_source=mastodon&utm_medium=social&utm_campaign=organic" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://elifesciences.org/articles/95485?utm_source=mastodon&utm_medium=social&utm_campaign=organic</a>

jobRxivPostdoc in computational genomics - Farabella Lab Istituto Italiano di Tecnologia????JOB OPENING???? We are hiring <a href="https://mas.to/tags/postdoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#postdoc</a> <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a> <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> <a href="https://mas.to/tags/bioinfo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinfo</a>! For more info, feel free to DM or visit <a href="https://farabellalab.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://farabellalab.org</a>.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-</a>... <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=84618" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=84618</a>

James Hawley, PhDI'm officially going to be attending <a href="https://scholar.social/tags/NeurIPS2024" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#NeurIPS2024</a> in December! I signed up too late to give a presentation, but I'd love to meet any <a href="https://scholar.social/tags/statistics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#statistics</a>, <a href="https://scholar.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a>, and <a href="https://scholar.social/tags/causalInference" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#causalInference</a> people who are attending.I'm particularly interested in the Causality and Large Models workshop (<a href="https://calm-workshop-2024.github.io/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://calm-workshop-2024.github.io/</a>) and am looking forward to all the talks.

jobRxivPostdoc in computational genomics - Farabella Lab Istituto Italiano di Tecnologia????JOB OPENING???? We are hiring <a href="https://mas.to/tags/postdoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#postdoc</a> <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a> <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> <a href="https://mas.to/tags/bioinfo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinfo</a>! For more info, feel free to DM or visit <a href="https://farabellalab.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://farabellalab.org</a>.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-</a>... <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=81808" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=81808</a>

Hannes @ 38c3📦 Just released 📦 𝕝𝕒𝕞𝕓𝕕𝕒-𝕧.𝟛.𝟙.𝟘<a href="https://github.com/seqan/lambda/releases/tag/lambda-v3.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/seqan/lambda/releases/tag/lambda-v3.1.0</a>which will probably be the last (feature) release.<a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a> <a href="https://mastodon.social/tags/Alignment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Alignment</a> <a href="https://mastodon.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> <a href="https://mastodon.social/tags/ComputationalBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ComputationalBiology</a>

jobRxivPostdoc in computational genomics - Farabella Lab Istituto Italiano di Tecnologia????JOB OPENING???? We are hiring <a href="https://mas.to/tags/postdoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#postdoc</a> <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a> <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> <a href="https://mas.to/tags/bioinfo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinfo</a>! For more info, feel free to DM or visit <a href="https://farabellalab.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://farabellalab.org</a>.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-</a>... <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=78266" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=78266</a>

James Hawley, PhDA paper I'm an author on has finally been published! Congrats to all the authors, especially the 3 co-leads.<a href="https://www.nature.com/articles/s41588-024-01826-3" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.nature.com/articles/s41588-024-01826-3</a>How structural variants affect the 3D chromatin structure in metastatic castration-resistant prostate cancer and facilitate a bunch of biologically interesting interactions in the nucleus is really interesting, especially how that affects gene expression and disease progression.Please take a look!<a href="https://scholar.social/tags/prostateCancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#prostateCancer</a> <a href="https://scholar.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://scholar.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a> <a href="https://scholar.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#genomics</a> <a href="https://scholar.social/tags/3Dgenome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#3Dgenome</a>

jobRxivPostdoc in computational genomics - Farabella Lab Istituto Italiano di Tecnologia????JOB OPENING???? We are hiring <a href="https://mas.to/tags/postdoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#postdoc</a> <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a> <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> <a href="https://mas.to/tags/bioinfo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinfo</a>! For more info, feel free to DM or visit <a href="https://farabellalab.org" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://farabellalab.org</a>.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-</a>... <a href="https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=77188" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/istituto-italiano-di-tecnologia-27778-postdoc-in-computational-genomics-farabella-lab/?feed_id=77188</a>

James Hawley, PhDI've had some time off from work recently, which has given me the space to think about about my career in computational biology and how I try to be successful in it.This blog post was inspired by a colleague that asked the simple question: what kind of tools and resources do you feel you need to access for success as a computational biologist?<a href="https://jrhawley.ca/2024/06/22/resources-for-successful-comp-bio" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jrhawley.ca/2024/06/22/resources-for-successful-comp-bio</a><a href="https://scholar.social/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#science</a> <a href="https://scholar.social/tags/academicChatter" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#academicChatter</a> <a href="https://scholar.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a> <a href="https://scholar.social/tags/computationalBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computationalBiology</a> <a href="https://scholar.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://scholar.social/tags/careers" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#careers</a>

Samuel LampaWe need recipes for common bioinformatics tasks 🧬🧑‍🍳 New post on the blog <a href="https://bionics.it/posts/bioinformatics-recipes" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://bionics.it/posts/bioinformatics-recipes</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a>

James Hawley, PhDThis is spot on. Like all parts of experiments, the people and the tasks to be done should not be left as an afterthought.<a href="https://www.huber.embl.de/group/posts/compbioisnotcheap.html" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.huber.embl.de/group/posts/compbioisnotcheap.html</a><a href="https://scholar.social/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#science</a> <a href="https://scholar.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descri... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=75011" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=75011</a>

Ferran CardosoWonderful kick-start of the EACR Cancer Multiomics conference in Bergamo today! Learnt lots of things, saw some very cool science, and it was cool that our proposal for an IDD platform at the Integrated Pathology Unit garnered so much interest!Check out my blog entry and poster here: <a href="https://ferranc96.github.io/posts/EACRpposterIDD/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://ferranc96.github.io/posts/EACRpposterIDD/</a><a href="https://fosstodon.org/tags/EACR2024" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EACR2024</a> <a href="https://fosstodon.org/tags/Conference" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Conference</a> <a href="https://fosstodon.org/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compBio</a> <a href="https://fosstodon.org/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descri... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=74822" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=74822</a>

Inácio MedeirosFolks, the team in Institut Curie where I work has an open position for Postdoc in Computation Biology. It's a very worth opportunity. Take a look!Galera, o grupo do Institut Curie onde eu trabalho tá com vaga aberta para Pós-Doc em Biologia Computacional. Oportunidade muito boa, dêem uma olhada!<a href="https://institut-curie.org/offre-emploi/postdoctoral-position-computational-biology-mf-0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://institut-curie.org/offre-emploi/postdoctoral-position-computational-biology-mf-0</a><a href="https://bolha.us/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://bolha.us/tags/JobAlert" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#JobAlert</a> <a href="https://bolha.us/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#compbio</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descri... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=74367" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics-2/?feed_id=74367</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descript... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=70846" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=70846</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descript... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=69223" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=69223</a>

jobRxivPostdoctoral Position in Mathematical and Computational Biology/Biophysics J. Heyrovsky Institute of Physical Chemistry, Czech Academy of SciencesHiring a <a href="https://mas.to/tags/MathBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathBio</a> / <a href="https://mas.to/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CompBio</a> / <a href="https://mas.to/tags/Biophysics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biophysics</a> / <a href="https://mas.to/tags/AppliedMath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AppliedMath</a> postdoctoral fellow to work on <a href="https://mas.to/tags/enzyme" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#enzyme</a> assembly modeling @JHINST_Prague!See the full job descript... <a href="https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=69216" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/j-heyrovsky-institute-of-physical-chemistry-czech-academy-of-sciences-27778-postdoctoral-position-in-mathematical-and-computational-biology-biophysics/?feed_id=69216</a>

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