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#bytesize

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nf-core<p>🦠 Interested in <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> &amp; anything 'meta-' ?(<a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a>, <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a>, <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metatranscriptomics</span></a>, <a href="https://mstdn.science/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metaproteomics</span></a>, <a href="https://mstdn.science/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbes</span></a> <a href="https://mstdn.science/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MicrobialEcology</span></a> &amp; more!)</p><p>📆 Join us next Tuesday 13:00 CEST (3rd September) for an nf-core <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> for the <a href="https://mstdn.science/tags/metaomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metaomics</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> special interest group! (Also on YouTube after!)</p><p>🤝 We will introduce how we want the community to work together with <a href="https://mstdn.science/tags/users" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>users</span></a> and <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> developers to make the best pipelines for anything 'meta-'</p><p>ℹ️ Zoom: <a href="https://nf-co.re/events/2024/bytesize_sig_meta_omics" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2024/bytesize_</span><span class="invisible">sig_meta_omics</span></a></p>
nf-core<p><a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talks are back! We start off tomorrow, 5th of September at 1pm CEST with a talk by Marcel Ribeiro-Dantas showing how to setup a gitpod environment!<br>Read more: <a href="https://nf-co.re/events/2023/bytesize_gitpod" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2023/bytesize_</span><span class="invisible">gitpod</span></a></p>
Phil Ewels<p>Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your <a href="https://genomic.social/tags/Python" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Python</span></a> analysis script and build it into a command-line tool, ready for release via @pypi / <a href="https://genomic.social/tags/bioconda" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioconda</span></a> / @BioContainers 🐍🐳🎉</p><p>Watch now on YouTube: <a href="https://www.youtube.com/watch?v=hOuS6mXCwhk" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">youtube.com/watch?v=hOuS6mXCwh</span><span class="invisible">k</span></a> <br>---<br>RT @nf_core<br>Hej, todays @nf_core <a href="https://genomic.social/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk about python script packaging with Phil Ewels will start in 8 minutes, 1pm CEST. Find the zoom link here: <a href="https://nf-co.re/…" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="">nf-co.re/…</span><span class="invisible"></span></a><br><a href="https://twitter.com/nf_core/status/1653351656686333953" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">twitter.com/nf_core/status/165</span><span class="invisible">3351656686333953</span></a></p>
nf-core<p>Hej, todays <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk about python script packaging with Phil Ewels will start in 8 minutes, 1pm CEST. Find the zoom link here: <a href="https://nf-co.re/events/2023/bytesize_python_packaging" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2023/bytesize_</span><span class="invisible">python_packaging</span></a></p>
nf-core<p>Join us tomorrow, 28th of February at 1pm CET, for the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk with Sabrina Krakau. She will introduce to us the nf-core/mag pipeline!</p><p>More info at <a href="https://nf-co.re/events/2023/bytesize_mag" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2023/bytesize_</span><span class="invisible">mag</span></a></p>
nf-core<p>the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk about variantcatalogue with @CorreardSolenne is now available on youtube: <a href="https://www.youtube.com/watch?v=Em1cHCLQQ_c" rel="nofollow noopener" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">youtube.com/watch?v=Em1cHCLQQ_</span><span class="invisible">c</span></a>! Ask questions in nf-core Slack <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a></p>
nf-core<p>Join us today, Jan 17th at **1pm CET**, for the first <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk of 2023. Sofia Stamouli will be telling us about nf-core/taxprofiler, a best-practice analysis pipeline for taxonomic profiling of shotgun metagenomic data.</p><p>More info at <a href="https://nf-co.re/events/2023/bytesize_nf-core-taxprofiler" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2023/bytesize_</span><span class="invisible">nf-core-taxprofiler</span></a></p>
nf-core<p>Join us tomorrow 6th of December, *this time at the unusual time of 2pm CET* for the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk with Edmund Miller. He will talk about his experience with nf-test.</p><p>More information here: <a href="https://nf-co.re/events/2022/bytesize_nftest" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2022/bytesize_</span><span class="invisible">nftest</span></a></p>
nf-core<p>Join us tomorrow 29th of November at 1pm CET for the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk with Phil Ewels. He will talk about using the <a href="https://mstdn.science/tags/github" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>github</span></a> CLI and VSCode can be used in daily work.</p><p>More info at <a href="https://nf-co.re/events/2022/bytesize-working_with_github" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2022/bytesize-</span><span class="invisible">working_with_github</span></a></p>
nf-core<p>Join us tomorrow on November 22nd at **1pm CET** for the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk with Maxime Garcia. He will share with us all there is (currently) to know about the brand-new @nf-core subworkflows!</p><p>More info at <a href="https://nf-co.re/events/2022/bytesize-Subworkflows" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2022/bytesize-</span><span class="invisible">Subworkflows</span></a></p>
nf-core<p>Join us tomorrow on November 15th at **1pm CET** for the <span class="h-card"><a href="https://mstdn.science/@nf_core" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>nf_core</span></a></span> <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> talk with Chris Hakkaart. He will show us how to integrate custom scripts, such as R, Perl or Python scripts, into a @nextflowio pipeline!</p><p>More information at <a href="https://nf-co.re/events/2022/bytesize-custom_scripts" rel="nofollow noopener" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2022/bytesize-</span><span class="invisible">custom_scripts</span></a></p>