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#annotation

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Christof Schöch

Wisst ihr noch nicht, in welche Session ihr um 11 Uhr gehen wollt? Dann kommt doch zur Session "CLS Methoden II" in Hörsaal D3!

Neben Janina Jacke zu Argumentvisualisierung und Nora Ketschik zu Netzwerkanalyse wird dort auch Julia Dudar aus einem Trierer @tcdh Projekt "Beyond Words" sprechen: "Exploring Measures of Distinctiveness: An Evaluation Using Synthetic Texts".

Donnerstag 2:2: CLS Methoden II Ort: HSBI D3 Chair: Ulrike Henny-Krahmer, Universitat Rostock Platinstandard-Annotation in der digitalen Literaturwissenschaft: Definition, Funktionen und diskursive Argumentvisualisierung als Best-Practice-Beispiel Janina Jacke Christian-Albrechts-Universitat zu Kiel, Deutschland Exploring Measures of Distinctiveness: An Evaluation Using Synthetic Texts Julia Dudar, Christof Schéch Universitat Trier, Deutschland Netzwerkanalysen narrativer Texte — ein Vorgehensmodell Nora Ketschik Universitat Stuttgart, Deutschland
#CLS#Netzwerke#Annotation
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tyx

While looking for a reason why quite standard #genome #annotation pipeline failed I discovered a 159 000 AA long ORF in Augustus output. Yes, you read this right that's 477K of #repeats without any stop codons. I just need to understand what I hate more - RepeatModeler, Augustus, or this group of organisms.

PS there are at least 10 more >100K AA. FML.

Public
Trevor Burrows

Does anyone know of a tutorial/guide that I could use to set someone up for marking up documents digitally while #reading?

Here's what I mean:
I have a lot of students who only/primarily read digitally. They don't have printers, typically won't print out sources.

I've learned to work with that in a lot of ways, but *in class* we mark up sources on paper regularly, and I encourage students to take this action and apply it in their own reading at home. So there's a disconnect between the physical practice in the classroom and how some students are likely to do things at home.

I have all sorts of annotation tools for digital stuff, and notetaking tools that include PDF markup tools, but what I'm looking for is a guide that sets someone up for doing digital scribbling naturally, just as part of everyday reading for coursework: the best software to use, but also best practices, ways to make it more natural, easier.

Does anything like that exist?

#Annotation#EReading#PDF
Public
Meuthen IDEA LAB

We're happy to congratulate our student Melissa Loskant for completing a project module in out lab titled "Improved snail genome annotation with AUGUSTUS: The role of data filtering and selection". She was successful in determining the optimal parameters for training high-quality AUGUSTUS models across all available gastropod genomes, which is important information for all annotation-related publications!
#ecology #evolution #genetics #bioinformatics #annotation #gastropods #augustus

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