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#Metabarcoding

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Frédéric Rimet<p>We have a post-doc position for 15 months in the framework of the <a href="https://dnaquaimg.eu/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">dnaquaimg.eu/</span><span class="invisible"></span></a> project (11 countries) at UMR Carrtel <a href="https://carrtel.lyon-grenoble.hub.inrae.fr/unit" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">carrtel.lyon-grenoble.hub.inra</span><span class="invisible">e.fr/unit</span></a> (Lake Geneva, France). <br>If you have good skills in molecular biology, aquatic ecology, biomonitoring, and if you want to join a good team working in a great place surrounded by mountains and lakes have a look to our job offer:<br><a href="https://jobs.inrae.fr/en/ot-27021" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">jobs.inrae.fr/en/ot-27021</span><span class="invisible"></span></a><br><a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mastodon.social/tags/thonon" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>thonon</span></a> <a href="https://mastodon.social/tags/lake" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lake</span></a> <a href="https://mastodon.social/tags/geneva" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>geneva</span></a> <a href="https://mastodon.social/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>postdoc</span></a> <a href="https://mastodon.social/tags/job" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>job</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>Applying environmental DNA metabarcoding to calculate an index of biotic<br>integrity for freshwater fish</p><p><a href="https://www.biorxiv.org/content/10.1101/2025.05.26.656190v1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">25.05.26.656190v1</span></a></p><p><a href="https://ecoevo.social/tags/environmentalDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>environmentalDNA</span></a> <a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/freshwater" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>freshwater</span></a> <a href="https://ecoevo.social/tags/fish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fish</span></a> <a href="https://ecoevo.social/tags/IndexOfBioticIntegrity" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>IndexOfBioticIntegrity</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>The distribution of genetic diversity in ecological communities: A unifying measure for monitoring biodiversity change</p><p><a href="https://ecoevorxiv.org/repository/view/9169/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">ecoevorxiv.org/repository/view</span><span class="invisible">/9169/</span></a></p><p>TLDR - CGD - distribution of nucleotide diversity values across all OTUs in a community sample</p><p><a href="https://ecoevo.social/tags/CommunityGeneticDistribution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CommunityGeneticDistribution</span></a> <a href="https://ecoevo.social/tags/CGD" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CGD</span></a> <a href="https://ecoevo.social/tags/biodiversity" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biodiversity</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/OTU" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OTU</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>Capture—Incubate—Release: An Animal-Friendly Approach to Assess Local Aquatic Macroinvertebrate Species Diversity Through Environmental DNA Metabarcoding</p><p><a href="https://onlinelibrary.wiley.com/doi/10.1002/edn3.70112" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">onlinelibrary.wiley.com/doi/10</span><span class="invisible">.1002/edn3.70112</span></a></p><p><a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://ecoevo.social/tags/macroinvertebrate" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>macroinvertebrate</span></a> <a href="https://ecoevo.social/tags/nondestructive" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nondestructive</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a></p>
Frédéric Rimet<p>Une offre de post-doc de 1 an renouvelable 1 an :<br>&gt; Finaliser le développement d’une méthode d’identification moléculaire du phytoplancton utilisant le séquençage ADN haut-débit <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a></p><p>&gt; CDD post-doc de 1 an, reconductible 1 an : démarrage à partir de mai 2025, Lieu : UMR Carrtel, Thonon <a href="https://fr-carrtel.lyon-grenoble.hub.inrae.fr/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">fr-carrtel.lyon-grenoble.hub.i</span><span class="invisible">nrae.fr/</span></a></p><p>&gt; Projet pluriannuel <a href="https://mastodon.social/tags/OFB" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OFB</span></a> et le projet européen <a href="https://mastodon.social/tags/eDNAquaPlan" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNAquaPlan</span></a></p><p>&gt; candidature : frederic.rimet@inrae.fr</p><p>&gt; plus de détails : <a href="https://filesender.renater.fr/?s=download&amp;token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">filesender.renater.fr/?s=downl</span><span class="invisible">oad&amp;token=81a4c9dc-5e0f-49eb-a5bc-d83b53abb14d</span></a></p>
GBIF Mammut sp.<p>New paper in Molecular Ecology Resources sharing data in <span class="h-card" translate="no"><a href="https://ecoevo.social/@gbif" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>gbif</span></a></span>: </p><p>Navigating Past <a href="https://biodiversity.social/tags/Oceans" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Oceans</span></a>: Comparing <a href="https://biodiversity.social/tags/Metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metabarcoding</span></a> and <a href="https://biodiversity.social/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metagenomics</span></a> of <a href="https://biodiversity.social/tags/Marine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Marine</span></a> Ancient Sediment Environmental <a href="https://biodiversity.social/tags/DNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DNA</span></a> 🇳🇴</p><p> <a href="https://biodiversity.social/tags/CiteTheDOI" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CiteTheDOI</span></a>: ✅</p><p> <a href="https://biodiversity.social/tags/OpenAccess" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenAccess</span></a>: ⭐️</p><p><a href="https://doi.org/10.1111/1755-0998.14086" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1111/1755-0998.1408</span><span class="invisible">6</span></a></p>
Lukas VFN 🇪🇺<p>Researchers partner with <a href="https://scholar.social/tags/IndigenousKnowledge" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>IndigenousKnowledge</span></a> holders to protect threatened great desert skink Tjakuṟa <a href="https://phys.org/news/2025-01-partner-indigenous-knowledge-holders-threatened.html" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2025-01-partner-</span><span class="invisible">indigenous-knowledge-holders-threatened.html</span></a></p><p><a href="https://scholar.social/tags/Metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metabarcoding</span></a> clarifies the diet of the elusive and vulnerable Australian <a href="https://scholar.social/tags/tjakura" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>tjakura</span></a> (Great Desert <a href="https://scholar.social/tags/Skink" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Skink</span></a>, Liopholis kintorei) <a href="https://www.frontiersin.org/journals/ecology-and-evolution/articles/10.3389/fevo.2024.1354138/full" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">frontiersin.org/journals/ecolo</span><span class="invisible">gy-and-evolution/articles/10.3389/fevo.2024.1354138/full</span></a></p><p>"Tjakuṟa is a large <a href="https://scholar.social/tags/lizard" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lizard</span></a> that lives in multi-tunneled communal burrows in <a href="https://scholar.social/tags/Australia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Australia</span></a>... scientists rely on <a href="https://scholar.social/tags/A%E1%B9%89angu" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Aṉangu</span></a> Traditional Knowledge to locate Tjakuṟa burrows, estimate burrow occupancy, identify predator tracks"</p>
AquaEcOmics<p>The preliminary program for the AquaEcOmics symposium is now available: <a href="https://aquaecomics.symposium.inrae.fr/program2" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">aquaecomics.symposium.inrae.fr</span><span class="invisible">/program2</span></a></p><p><a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>omics</span></a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mastodon.social/tags/dPCR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dPCR</span></a> <a href="https://mastodon.social/tags/marine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>marine</span></a> <a href="https://mastodon.social/tags/freshwater" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>freshwater</span></a> <a href="https://mastodon.social/tags/ecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecology</span></a> <a href="https://mastodon.social/tags/biomonitoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biomonitoring</span></a> <a href="https://mastodon.social/tags/aquaecomics2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>aquaecomics2025</span></a> </p><p>Make sure not to miss out and register before the 31th of January: <a href="https://aquaecomics.symposium.inrae.fr/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">aquaecomics.symposium.inrae.fr/</span><span class="invisible"></span></a></p>
Peter Cock<p>Pleased to see this published (and open access) - I’ve been contributing to this <a href="https://fediscience.org/tags/ForestResearch" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ForestResearch</span></a> / <a href="https://fediscience.org/tags/HuttonInstitute" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HuttonInstitute</span></a> led project for over 5 years (with most of the co-authors even longer):</p><p>Green et al (2025) The prevalence of Phytophthora in British plant nurseries; high-risk hosts and substrates and opportunities to implement best practice <a href="https://doi.org/10.1111/ppa.14044" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1111/ppa.14044</span><span class="invisible"></span></a> </p><p><a href="https://fediscience.org/tags/EnvironmentalDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EnvironmentalDNA</span></a> <a href="https://fediscience.org/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://fediscience.org/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://fediscience.org/tags/ITS1" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ITS1</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>Developing and testing a new Ecological Quality Status index based on marine nematode metabarcoding: A proof of concept</p><p><a href="https://www.sciencedirect.com/science/article/pii/S004565352402900X" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sciencedirect.com/science/arti</span><span class="invisible">cle/pii/S004565352402900X</span></a></p><p><a href="https://ecoevo.social/tags/biomonitoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biomonitoring</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/nematodes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nematodes</span></a> <a href="https://ecoevo.social/tags/marine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>marine</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>ITSxpress version 2: software to rapidly trim internal transcribed spacer sequences with quality scores for amplicon sequencing</p><p><a href="https://journals.asm.org/doi/10.1128/spectrum.00601-24" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">journals.asm.org/doi/10.1128/s</span><span class="invisible">pectrum.00601-24</span></a></p><p><a href="https://ecoevo.social/tags/ITS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ITS</span></a> <a href="https://ecoevo.social/tags/rDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rDNA</span></a> <a href="https://ecoevo.social/tags/trimming" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>trimming</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>A new spike-in-based method for quantitative metabarcoding of soil fungi and bacteria</p><p><a href="https://link.springer.com/article/10.1007/s10123-023-00422-5" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">link.springer.com/article/10.1</span><span class="invisible">007/s10123-023-00422-5</span></a></p><p><a href="https://ecoevo.social/tags/quantitative" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>quantitative</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/bacteria" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bacteria</span></a> <a href="https://ecoevo.social/tags/fungi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fungi</span></a></p>
Peter Cock<p>Took a while, but my largest ever upload of data to the <a href="https://fediscience.org/tags/ENA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ENA</span></a> / <a href="https://fediscience.org/tags/SRA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SRA</span></a> is live, nearly 4000 <a href="https://fediscience.org/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> amplicon sequencing runs using a <a href="https://fediscience.org/tags/Phytophthora" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phytophthora</span></a> ITS1 marker: <a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB76241" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">ebi.ac.uk/ena/browser/view/PRJ</span><span class="invisible">EB76241</span></a></p><p>Managing sequencing <a href="https://fediscience.org/tags/metadata" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metadata</span></a> is hard!</p>
Teresita Porter 🙋🏻‍♀️<p>What Quality Suffices for Nanopore Metabarcoding? Reconsidering Methodology and Ectomycorrhizae in Decaying *Fagus sylvatica* Bark as Case Study</p><p><a href="https://www.mdpi.com/2309-608X/10/10/708" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">mdpi.com/2309-608X/10/10/708</span><span class="invisible"></span></a></p><p><a href="https://ecoevo.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/fungi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fungi</span></a> <a href="https://ecoevo.social/tags/ECM" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ECM</span></a> <a href="https://ecoevo.social/tags/ectomycorrhae" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ectomycorrhae</span></a></p>
Lukas VFN 🇪🇺<p>Saving the <a href="https://scholar.social/tags/bats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bats</span></a>: Researchers find <a href="https://scholar.social/tags/bacteria" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bacteria</span></a> and <a href="https://scholar.social/tags/fungi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fungi</span></a> on <a href="https://scholar.social/tags/bat" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bat</span></a> wings that could help fight deadly white-nose syndrome <a href="https://phys.org/news/2024-10-bacteria-fungi-wings-deadly-white.html" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">phys.org/news/2024-10-bacteria</span><span class="invisible">-fungi-wings-deadly-white.html</span></a></p><p>DNA <a href="https://scholar.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> analyses reveal fine-scale <a href="https://scholar.social/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiome</span></a> structures on Western Canadian bat wings <a href="https://journals.asm.org/doi/10.1128/spectrum.00376-24" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">journals.asm.org/doi/10.1128/s</span><span class="invisible">pectrum.00376-24</span></a> </p><p>"Healthy wings are critical for the survival and reproduction of bats and the wing microbiome is believed to play a major role in their susceptibility to <a href="https://scholar.social/tags/WhiteNoseSyndrome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>WhiteNoseSyndrome</span></a>"</p>
Teresita Porter 🙋🏻‍♀️<p>Environmental RNA metabarcoding for ballast water microbial diversity: Minimizing false positives</p><p><a href="https://doi.org/10.1016/j.scitotenv.2024.176902" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1016/j.scitotenv.20</span><span class="invisible">24.176902</span></a></p><p><a href="https://ecoevo.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://ecoevo.social/tags/eRNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eRNA</span></a> <a href="https://ecoevo.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://ecoevo.social/tags/biomonitoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biomonitoring</span></a></p>
Teresita Porter 🙋🏻‍♀️<p>The ASV Registry: a place for ASVs to be</p><p><a href="https://mbmg.pensoft.net/article/124564/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">mbmg.pensoft.net/article/12456</span><span class="invisible">4/</span></a></p><p><a href="https://ecoevo.social/tags/DNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DNA</span></a> <a href="https://ecoevo.social/tags/Metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Metabarcoding</span></a> <a href="https://ecoevo.social/tags/ESV" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ESV</span></a> <a href="https://ecoevo.social/tags/ASV" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ASV</span></a> <a href="https://ecoevo.social/tags/ZOTU" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ZOTU</span></a> <a href="https://ecoevo.social/tags/database" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>database</span></a></p>
AquaEcOmics<p>Register for the upcoming AquaEcOmics Symposium and come listen to great keynote speakers who will discuss the use of environmental omics for microbial network analyses, assessing functional diversity and evolutionary diversification and gaining insights into spatial and temporal community dynamics. <a href="https://aquaecomics.symposium.inrae.fr/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">aquaecomics.symposium.inrae.fr</span><span class="invisible">/</span></a> <a href="https://mastodon.social/tags/aquaecomics2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>aquaecomics2025</span></a> <a href="https://mastodon.social/tags/eDNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>eDNA</span></a> <a href="https://mastodon.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>omics</span></a> <a href="https://mastodon.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://mastodon.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> <a href="https://mastodon.social/tags/dPCR" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dPCR</span></a> <a href="https://mastodon.social/tags/marine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>marine</span></a> <a href="https://mastodon.social/tags/freshwater" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>freshwater</span></a> <a href="https://mastodon.social/tags/ecology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ecology</span></a> <a href="https://mastodon.social/tags/biomonitoring" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biomonitoring</span></a></p>
Lukas VFN 🇪🇺<p>New study reveals the crucial role of <a href="https://scholar.social/tags/jellyfish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>jellyfish</span></a> in Greenlandic waters <a href="https://www.rcinet.ca/eye-on-the-arctic/2024/08/27/new-study-reveals-the-crucial-role-of-jellyfish-in-greenlandic-waters/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">rcinet.ca/eye-on-the-arctic/20</span><span class="invisible">24/08/27/new-study-reveals-the-crucial-role-of-jellyfish-in-greenlandic-waters/</span></a></p><p>A belly full of jelly? DNA <a href="https://scholar.social/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a> shows evidence for gelatinous <a href="https://scholar.social/tags/zooplankton" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>zooplankton</span></a> predation by several <a href="https://scholar.social/tags/fish" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>fish</span></a> species in <a href="https://scholar.social/tags/Greenland" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Greenland</span></a> waters <a href="https://royalsocietypublishing.org/doi/10.1098/rsos.240797" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">royalsocietypublishing.org/doi</span><span class="invisible">/10.1098/rsos.240797</span></a></p><p>"Scientists have commonly regarded jellyfish as a secondary food source for predatory fish, due to their low energy density and nutritional value. But... fish consume jellyfish much more frequently than previously thought."</p>
nf-core<p>🦠 Interested in <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> &amp; anything 'meta-' ?(<a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a>, <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabarcoding</span></a>, <a href="https://mstdn.science/tags/metatranscriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metatranscriptomics</span></a>, <a href="https://mstdn.science/tags/metaproteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metaproteomics</span></a>, <a href="https://mstdn.science/tags/microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbes</span></a> <a href="https://mstdn.science/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MicrobialEcology</span></a> &amp; more!)</p><p>📆 Join us next Tuesday 13:00 CEST (3rd September) for an nf-core <a href="https://mstdn.science/tags/bytesize" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bytesize</span></a> for the <a href="https://mstdn.science/tags/metaomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metaomics</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nfcore</span></a> special interest group! (Also on YouTube after!)</p><p>🤝 We will introduce how we want the community to work together with <a href="https://mstdn.science/tags/users" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>users</span></a> and <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> developers to make the best pipelines for anything 'meta-'</p><p>ℹ️ Zoom: <a href="https://nf-co.re/events/2024/bytesize_sig_meta_omics" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">nf-co.re/events/2024/bytesize_</span><span class="invisible">sig_meta_omics</span></a></p>